PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.285620.1
Common NameCsa_5G604000, LOC101207806
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 313aa    MW: 33933.8 Da    PI: 9.6544
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.285620.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-1394138347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
   Cucsa.285620.1  94 PWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 138
                      7*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.109.7E-4522IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.911722IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129414.70387143IPR017930Myb domain
SuperFamilySSF466893.36E-1789144IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-1790141IPR006447Myb domain, plants
SMARTSM007171.5E-991141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-1194138IPR009057Homeodomain-like
PfamPF002499.5E-1194138IPR001005SANT/Myb domain
CDDcd001672.15E-994138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MNVSRTCSLC GNNGHNSRTC PEADGTTGFM LFGVRLTTTS DGSNSFRKSF SMNNLSQYAD  60
HPPSQDSNHA DAGYASDDVV HPSDRSGGRK RGIPWTEEEH RLFLLGLQKV GKGDWRGISR  120
NFVKTRTPTQ VASHAQKYFL RRNNFNRRRR RSSLFDITTH TFTSSSKEDD LIFSGHEATQ  180
PPLPPSTPQK DNTPGNFSVK IHQAKPPPAA VASGVVDSKA VESTLTLNSS NYPAKPCNSK  240
IIRPIPMLPL SPYPKFAELN INERIPEDPL PLTLKLSTSQ SEGQSPAAAS QSSGSFQTMS  300
GGGDSIDIVS VA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00630PBMTransfer from PK17526.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135214.10.0PREDICTED: transcription factor MYB1R1
TrEMBLA0A0A0KQE30.0A0A0A0KQE3_CUCSA; Uncharacterized protein
STRINGVIT_01s0026g01050.t013e-87(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53383350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.23e-63MYB_related family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]